Publications

T. Yamamoto Group

2021

Original Papers

Kojima, Y., Yamashiro, C., Murase, Y., Yabuta, Y., Okamoto, I., Iwatani, C., Tsuchiya, H., Nakaya, M., Tsukiyama, T., Nakamura, T., Yamamoto, T., & Saitou, M. (2021). GATA transcription factors, SOX17 and TFAP2C, drive the human germ-cell specification program. Life Sci Alliance, 4(5). https://doi.org/10.26508/lsa.202000974

Io, S., Kabata, M., Iemura, Y., Semi, K., Morone, N., Minagawa, A., Wang, B., Okamoto, I., Nakamura, T., Kojima, Y., Iwatani, C., Tsuchiya, H., Kaswandy, B., Kondoh, E., Kaneko, S., Woltjen, K., Saitou, M.,Yamamoto, T., Mandai, M., & Takashima, Y. (2021). Capturing human trophoblast development with naive pluripotent stem cells in vitro. Cell Stem Cell. https://doi.org/10.1016/j.stem.2021.03.013

Ichijo, R., Kabata, M., Kidoya, H., Muramatsu, F., Ishibashi, R., Abe, K., Tsutsui, K., Kubo, H., Iizuka, Y., Kitano, S., Miyachi,H., Kubota, Y., Fujiwara, H., Sada, A., Yamamoto, T., & Toyoshima,F. (2021). Vasculature-driven stem cell population coordinates tissue scaling in dynamic organs. Sci Adv, 7(7). https://doi.org/10.1126/sciadv.abd2575

Katagiri, N., Hitomi, H., Mae, S. I., Kotaka, M., Lei, L., Yamamoto, T., Nishiyama, A., & Osafune, K. (2021). Retinoic acid regulates erythropoietin production cooperatively with hypoxia-inducible factors in human iPSC-derived erythropoietin-producing cells. Scientific Reports, 11(1). https://doi.org/10.1038/s41598-021-83431-6

Morimoto, H., Yamamoto, T., Miyazaki, T., Ogonuki,N., Ogura, A., Tanaka, T., Kanatsu-Shinohara, M., Yabe-Nishimura, C., Zhang, H.L., Pommier, Y., Trumpp, A., & Shinohara, T. (2021). An interplay of NOX1-derived ROS and oxygen determines the spermatogonial stem cell self-renewal efficiency under hypoxia. Genes & Development, 35(3-4). https://doi.org/10.1101/gad.339903.120

Sankoda, N., Tanabe, W., Tanaka, A., Shibata, H., Woltjen, K., Chiba, T., Haga, H., Sakai, Y., Mandai, M., Yamamoto, T., Yamada,Y., Uemoto, S., & Kawaguchi, Y. (2021). Epithelial expression of Gata4 and Sox2 regulates specification of the squamous-columnar junction via MAPK/ERK signaling in mice. Nat Commun, 12(1), 560. https://doi.org/10.1038/s41467-021-20906-0

Sano, E., Deguchi, S., Sakamoto, A., Mimura, N., Hirabayashi, A., Muramoto, Y., Noda, T., Yamamoto, T., & Takayama,K. (2021). Modeling SARS-CoV-2 infection and its individual differences with ACE2-expressing human iPS cells. iScience, 102428. https://doi.org/10.1016/j.isci.2021.102428

Yuzuriha, A, Nakamura, S, Sugimoto, N, Kihara, S,Nakagawa, M, Yamamoto, T, Sekiguchi, K, & Eto, K. (2021).Extracellular laminin regulates hematopoietic potential of pluripotent stemcells through integrin β1-ILK-β-catenin-JUN axis. Stem Cell Research, 53,102287.

2020

Original Papers

Matsuda, M., Yamanaka, Y., Uemura, M., Osawa, M., Saito, M. K., Nagahashi, A., Nishio, M., Guo, L., Ikegawa, S., Sakurai, S., Kihara,S., Maurissen, T. L., Nakamura, M., Matsumoto, T., Yoshitomi, H., Ikeya, M.,Kawakami, N., Yamamoto, T., Woltjen, K., Ebisuya, M., Toguchida, J.,& Alev, C. (2020). Recapitulating the human segmentation clock with pluripotent stem cells. Nature, 580(7801), 124-+. https://doi.org/10.1038/s41586-020-2144-9

Murase, Y., Yabuta, Y., Ohta, H., Yamashiro, C., Nakamura,T., Yamamoto, T., & Saitou, M. (2020). Long-term expansion with germline potential of human primordial germ cell-like cells in vitro. Embo Journal, 39(21). https://doi.org/10.15252/embj.2020104929

Nagaoka, S. I., Nakaki, F., Miyauchi, H., Nosaka, Y., Ohta, H., Yabuta, Y., Kurimoto, K., Hayashi, K., Nakamura, T., Yamamoto, T.,& Saitou, M. (2020). ZGLP1 is a determinant for the oogenic fate inmice. Science, 367(6482), 1089-+. https://doi.org/10.1126/science.aaw4115

Ohta, H, Yabuta, Y, Kurimoto, K, Nakamura, T, Murase, Y, Yamamoto,T, & Saitou, M. (2020). Cyclosporin A and FGF signaling support the proliferation/survival of mouse primordial germ cell-like cells in vitro. Biology of Reproduction. https://doi.org/10.1093/biolre/ioaa195

Sakai, Y., Nakamura, T., Okamoto, I., Gyobu-Motani, S.,Ohta, H., Yabuta, Y., Tsukiyama, T., Iwatani, C., Tsuchiya, H., Ema,M., Morizane, A., Takahashi, J., Yamamoto, T., & Saitou, M.(2020). Induction of the germ cell fate from pluripotent stem cells in cynomolgus monkeys. Biology of Reproduction, 102(3), 620-638. https://doi.org/10.1093/biolre/ioz205

Senoo, M., Hozoji, H., Ishikawa-Yamauchi, Y., Takijiri, T., Ohta, S., Ukai, T., Kabata, M., Yamamoto, T., Yamada, Y., Ikawa, M.,& Ozawa, M. (2020). RNA-binding protein Ptbp1 regulates alternative splicing and transcriptome in spermatogonia and maintains spermatogenesis in concert with Nanos3. Journal of Reproduction and Development, 66(5),459-467. https://doi.org/10.1262/jrd.2020-060

Yagi, M., Kabata, M., Tanaka, A., Ukai, T., Ohta, S., Nakabayashi, K., Shimizu, M., Hata, K., Meissner, A., Yamamoto, T.,& Yamada, Y. (2020). Identification of distinct loci for de novo DNAm ethylation by DNMT3A and DNMT3B during mammalian development. Nature Communications, 11(1). https://doi.org/10.1038/s41467-020-16989-w

2019

Original Papers

Arai, H. N., Sato, F., Yamamoto, T., Woltjen, K., Kiyonari, H., Yoshimoto, Y., Shukunami, C., Akiyama, H., Kist, R., & Sehara-Fujisawa, A. (2019). Metalloprotease-Dependent Attenuation of BMP Signaling Restricts Cardiac NeuralCrest Cell Fate. Cell Reports, 29(3), 603-+. https://doi.org/10.1016/j.celrep.2019.09.019

Komura, S., Ito, K., Ohta, S., Ukai, T., Kabata, M., Itakura, F., Semi, K., Matsuda, Y., Hashimoto, K., Shibata, H., Sone, M., Jo, N., Sekiguchi, K., Ohno, T., Akiyama, H., Shimizu, K., Woltjen, K., Ozawa, M., Toguchida, J., Yamamoto, T., &Yamada, Y. (2019). Cell-type dependent enhancer binding of the EWS/ATF1 fusion gene in clear cell sarcomas. Nature Communications, 10. https://doi.org/10.1038/s41467-019-11745-1

Morimoto, H., Kanastu-Shinohara, M., Ogonuki, N., Kamimura, S., Ogura, A., Yabe-Nishimura, C., Mori, Y., Morimoto, T., Watanabe, S., Otsu, K., Yamamoto, T., & Shinohara, T. (2019). ROS amplification drives mouse spermatogonialstem cell self-renewal. Life Science Alliance, 2(2). https://doi.org/10.26508/lsa.201900374

Sakakura, M., Ohta, S., Yagi, M., Tanaka, A., Norihide, J., Woltjen, K., Yamamoto, T., & Yamada, Y. (2019). Smarcb1 maintains the cellular identity and the chromatin landscapes of mouse embryonic stem cells. Biochemical andBiophysical Research Communications, 519(4), 705-713. https://doi.org/10.1016/j.bbrc.2019.09.054

Terada, Y., Jo, N., Arakawa, Y., Sakakura, M., Yamada, Y., Ukai, T., Kabata, M., Mitsunaga, K., Mineharu, Y., Ohta, S., Nakagawa, M., Miyamoto, S., Yamamoto, T. &Yamada Y. (2019). Human Pluripotent Stem Cell-Derived Tumor Model Uncovers the Embryonic Stem Cell Signature as a Key Driver in Atypical Teratoid/Rhabdoid Tumor. Cell Reports, 26(10), 2608-+. https://doi.org/10.1016/j.celrep.2019.02.009

Yagi, M., Kabata, M., Ukai, T., Ohta, S., Tanaka, A., Shimada, Y., Sugimoto, M., Araki, K., Okita, K., Woltjen, K., Hochedlinger, K., Yamamoto, T., & Yamada, Y . (2019). De Novo DNA Methylation at Imprinted Loci during Reprogramming into Naive and Primed Pluripotency. Stem Cell Reports, 12(5), 1113-1128. https://doi.org/10.1016/j.stemcr.2019.04.008

Hirata, K., Kodama, S., Nakano, Y., Minaki-Nakagawa, Y., Aoyama, Y., Sakikubo, M., Goto, T., Yoshida, M., Masui, T., Yamamoto, T., Uemoto, S., & Kawaguchi, Y . (2019). Exocrine tissue-driven TFF2 prevents apoptotic cell death of endocrine lineage during pancreas organogenesis. Scientific Reports, 9. https://doi.org/10.1038/s41598-018-38062-9

Kagawa, H., Shimamoto, R., Kim, S. I., Oceguera-Yanez, F., Yamamoto, T., Schroeder, T., & Woltjen, K. (2019). OVOL1 Influences the Determination and Expansion of iPSC Reprogramming Intermediates. Stem Cell Reports, 12(2), 319-332. https://doi.org/10.1016/j.stemcr.2018.12.008

Kanatsu-Shinohara, M., Yamamoto, T., Toh, H., Kazuki, Y., Kazuki, K., Imoto, J., Ikeo, K., Oshima, M., Shirahige, K., Iwama, A., Nabeshima, Y., Sasaki, H., & Shinohara, T . (2019). Aging of spermatogonial stem cells by Jnk-mediated glycolysis activation. Proceedings of the National Academy of Sciences of the UnitedStates of America, 116(33), 16404-16409. https://doi.org/10.1073/pnas.1904980116

Matsui, S., Ochiai, M., Yasuda, K., Mae, S., Kotaka, M., Toyoda, T., Yamamoto, T., & Osafune, K. (2019). Differentiation and isolation of iPSC-derived remodeling ductal plate-like cells by use of an AQP1-GFP reporter human iPSC line. Stem Cell Research, 35. https://doi.org/10.1016/j.scr.2019.101400

Sato, T., Higashioka, K., Sakurai, H., Yamamoto, T., Goshima, N., Ueno, M., &Sotozono, C. (2019). Core Transcription Factors Promote Induction ofPAX3-Positive Skeletal Muscle Stem Cells. Stem Cell Reports, 13(2), 352-365. https://doi.org/10.1016/j.stemcr.2019.06.006