Publications
2022
Original Articles
Yamanaka, Y., Hamidi, S., Yoshioka-Kobayashi, K., Munira, S., Sunadome, K., Zhang, Y., Kurokawa, Y., Ericsson, R., Mieda, A., Thompson, J. L., Kerwin, J., Lisgo, S., Yamamoto, T., Moris, N., Martinez-Arias, A., Tsujimura, T., & Alev, C. Reconstituting human somitogenesis in vitro. Nature. doi:10.1038/s41586-022-05649-2
Review articles
Hamidi, S., & Alev, C. (2022). In vitro models of pre- and post-gastrulation embryonic development. Current Opinion in Genetics & Development, 77. doi:10.1016/j.gde.2022.101985
2021
Original Paper
Pretemer, Y., Kawai, S., Nagata, S., Nishio, M., Watanabe, M., Tamaki, S., Alev, C., Yamanaka, Y., Xue, J. Y., Wang, Z., Fukiage, K., Tsukanaka, M., Futami, T., Ikegawa, S., & Toguchida, J. (2021). Differentiation of Hypertrophic Chondrocytes from Human iPSCs for the In Vitro Modeling of Chondrodysplasias. Stem Cell Reports, 16(3), 610-625. https://doi.org/10.1016/j.stemcr.2021.01.014
Other Article
Koo, B. K., Bartfeld, S., & Alev, C. (2021). Organoids: ready for the revolution? J Mol Med (Berl), 99(4), 441-442. https://doi.org/10.1007/s00109-021-02063-5
2020
Original Papers
Matsuda, M., Yamanaka, Y., Uemura, M., Osawa, M., Saito, M. K., Nagahashi, A., Nishio, M., Guo, L., Ikegawa, S., Sakurai, S., Kihara, S., Maurissen, T. L., Nakamura, M., Matsumoto, T., Yoshitomi, H., Ikeya, M., Kawakami, N., Yamamoto, T., Woltjen, K., Ebisuya, M., Toguchida, J., & Alev, C. (2020). Recapitulating the human segmentation clock with pluripotent stem cells. Nature, 580(7801), 124-+. https://doi.org/10.1038/s41586-020-2144-9
Hamidi, S., Nakaya, Y., Nagai, H., Alev, C., Kasukawa, T., Chhabra, S., Lee, R., Niwa, H., Warmflash, A., Shibata, T., & Sheng, G. J. (2020). Mesenchymal-epithelial transition regulates initiation of pluripotency exit before gastrulation. Development, 147(3). https://doi.org/10.1242/dev.184960
Kishimoto, K., Furukawa, K. T., Luz-Madrigal, A., Yamaoka, A., Matsuoka, C., Habu, M., Alev, C., Zorn, A. M., & Morimoto, M. (2020). Bidirectional Wnt signaling between endoderm and mesoderm confers tracheal identity in mouse and human cells. Nature Communications, 11(1). https://doi.org/10.1038/s41467-020-17969-w
Matsuda, M., Hayashi, H., Garcia-Ojalvo, J., Yoshioka-Kobayashi, K., Kageyama, R., Yamanaka, Y., Ikeya, M., Toguchida, J., Alev, C., & Ebisuya, M. (2020). Species-specific segmentation clock periods are due to differential biochemical reaction speeds. Science, 369(6510), 1450-+.
Other Article
McIntyre, B., Asahara, T., & Alev, C. (2020). Overview of Basic Mechanisms of Notch Signaling in Development and Disease. In J. Reichrath & S. Reichrath (Eds.), Notch Signaling in Embryology and Cancer: Molecular Biology of Notch Signaling, 2nd Edition (Vol. 1227, pp. 9-27).
2019
Original Papers
Hirasawa, T., Alev, C., & Kuratani, S. (2019). Twins at Conspicuously Different Developmental Stages in a Turtle Egg. Zoolog Sci, 6(1), 1-4. https://doi.org/10.2108/zs180107
Kawai, S., Yoshitomi, H., Sunaga, J., Alev, C., Nagata, S., Nishio, M., Hada, M., Koyama, Y., Uemura, M., Sekiguchi, K., Maekawa, H., Ikeya, M., Tamaki, S., Jin, Y., Harada, Y., Fukiage, K., Adachi, T., Matsuda, S., & Toguchida, J . (2019). In vitro bone-like nodules generated from patient-derived iPSCsrecapitulate pathological bone phenotypes. Nat Biomed Eng, 3(7), 558-570. https://doi.org/10.1038/s41551-019-0410-7
Mori, T., Takaoka, H., Yamane, J., Alev, C., & Fujibuchi, W. (2019). Novelcomputational model of gastrula morphogenesis to identify spatial discriminatorgenes by self-organizing map (SOM) clustering. Scientific Reports, 9. https://doi.org/10.1038/s41598-019-49031-1
Otomo, N., Takeda, K., Kawai, S., Kou, I., Guo, L., Osawa, M., Alev, C., Kawakami, N., Miyake, N., Matsumoto, N., Yasuhiko, Y., Kotani, T., Suzuki, T., Uno, K., Sudo, H., Inami, S., Taneichi, H., Shigematsu, H., Watanabe, K., Yonezawa, I., Sugawara, R., Taniguchi, Y., Minami, S., Kaneko, K., Nakamura, M., Matsumoto, M., Toguchida, J., & Ikegawa, S. (2019). Bi-allelic loss of functionvariants of. J Med Genet, 56(9), 622-628. https://doi.org/10.1136/jmedgenet-2018-105920
Review Article
Hamidi, S., Nakaya, Y., Nagai, H., Alev, C., Shibata, T., & Sheng, G. J. (2019). Biomechanical regulation of EMT and epithelial morphogenesis in amnioteepiblast. Physical Biology, 16(4). https://doi.org/10.1088/1478-3975/ab1048
Other Article
McIntyre, Brendan, Asahara, Takayuki, & Alev, Cantas. (2020). Overview of basicmechanisms of Notch signaling in development and disease. In Notch Signalingin Embryology and Cancer (pp. 9-27): Springer.