Publications

Hiraoka Group

2020

Original Papers

Ichinomiya, T., Obayashi, I., & Hiraoka, Y.(2020). Protein-Folding Analysis Using Features Obtained by PersistentHomology. Biophysical Journal, 118(12), 2926-2937. https://doi.org/10.1016/j.bpj.2020.04.032

Hiraoka, Y., & Mikami, T. (2020). Percolationon Homology Generators in Codimension One. In Topological Data Analysis(pp. 307-342): Springer.

Hiraoka, Y., Ochiai, H., & Shirai, T. (2020). Zetafunctions of periodic cubical lattices and cyclotomic-like polynomials.Paper presented at the Various Aspects of Multiple Zeta Functions—in honor ofProfessor Kohji Matsumoto’s 60th birthday.

Koyama, C., Tahara, S., Kohara, S., Onodera, Y.,Småbråten, D.R., Selbach, S.M., Akola, J., Ishikawa, T., Masuno, A., Mizuno,A., Okada, J.T., Watanabe, Y., Nakata, Y., Ohara, K., Tamaru, H., Oda, H.,Obayashi, I., Hiraoka, Y., & Sakata, O. (2020). Very sharpdiffraction peak in nonglass-forming liquid with the formation of distortedtetraclusters. Npg Asia Materials, 12(1), 1-11. https://doi.org/https://doi.org/10.1038/s41427-020-0220-0

Onodera, Y., Kohara, S., Salmon, P. S., Hirata, A.,Nishiyama, N., Kitani, S., Zeidler, A., Shiga, M., Masuno, A., Inoue, H.,Tahara, S., Polidori, A., Fischer, H. E., Mori, T., Kojima, S., Kawaji, H.,Kolesnikov, A. I., Stone, M. B., Tucker, M. G., McDonnell, M. T., Hannon, A.C., Hiraoka, Y., Obayashi, I., Nakamura, T., Akola, J., Fujii, Y.,Ohara, K., Taniguchi, T., & Sakata, O. (2020). Structure and properties ofdensified silica glass: characterizing the order within disorder. Npg AsiaMaterials, 12(1). https://doi.org/10.1038/s41427-020-00262-z

Suzuki, A, Miyazawa, M, Okamoto, A, Shimizu, H, Obayashi,I, Hiraoka, Y, Tsuji, T, Kang, PK, & Ito, T. (2020). Inferringfracture forming processes by characterizing fracture network patterns withpersistent homology. Computers & Geosciences, 143, 104550. https://doi.org/https://doi.org/10.1016/j.cageo.2020.104550

2019

Original Papers

Asashiba, H., Escolar, E., Hiraoka, Y., & Takeuchi, H. (2019). Matrix method for persistence modules on commutative ladders of finite type. Japan Journal ofIndustrial and Applied Mathematics, 36(1), 97-130. https://doi.org/10.1007/s13160-018-0331-y

Onodera, Y., Takimoto, Y., Hijiya, H., Taniguchi, T., Urata, S., Inaba, S., Fujita, S., Obayashi, I., Hiraoka, Y., & Kohara, S. (2019). Origin of the mixed alkali effect in silicate glass. Npg Asia Materials, 11. https://doi.org/10.1038/s41427-019-0180-4

Oyama, A., Hiraoka, Y., Obayashi, I., Saikawa, Y., Furui, S., Shiraishi, K., Kumagai, S., Hayashi, T., & Kotoku, J. (2019). Hepatic tumor classification using texture and topology analysis of non-contrast-enhanced three-dimensionalT1-weighted MR images with a radiomics approach. Scientific Reports, 9. https://doi.org/10.1038/s41598-019-45283-z

Murakami, M, Kohara, S, Kitamura, N, Akola, J, Inoue, H, Hirata, A, Hiraoka, Y, Onodera, Y, Obayashi, I, Kalikka, J, Hirao, N, Musso, T, Foster, AS, Idemoto, Y, Sakata, O, & Ohishi, Y. (2019). Ultrahigh-pressure form of SiO2 glass with dense pyrite-type crystalline homology. Physical Review B, 99(4), 045153. https://doi.org/https://doi.org/10.1103/PhysRevB.99.045153

Onodera, Y., Kohara, S., Tahara, S., Masuno, A., Inoue, H., Shiga, M., Hirata, A., Tsuchiya, K., Hiraoka, Y., Obayashi, I., Ohara, K., Mizuno, A., & Sakata, O. (2019). Understanding diffraction patterns of glassy, liquid and amorphous materials via persistent homology analyses. Journal of the Ceramic Societyof Japan, 127(12), 853-863. https://doi.org/10.2109/jcersj2.19143