Kyoto University Institute for the
Advanced Study of Human Biology

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論文・出版物

村川グループ

2022

原著論文

Koido, M., Hon, C. C., Koyama, S., Kawaji, H., Murakawa, Y., Ishigaki, K., Ito, K., Sese, J., Parrish, N. F., Kamatani, Y., Carninci, P., & Terao, C. Prediction of the cell-type-specific transcription of non-coding RNAs from genome sequences via machine learning. Nature Biomedical Engineering. doi:10.1038/s41551-022-00961-8

Kunishima, N., Takeda, Y., Hirose, R., Kume, S., Maeda, M., Oguchi, A., Yanagita, M., Shibuya, H., Tamura, M., Kataoka, Y., Murakawa, Y., Ito, K., & Omote, K. (2022). Compact laboratory-based X-ray microscope enabling nondestructive 3D structure acquisition of mouse nephron with high speed and better user accessibility. Microscopy, 71(6), 315-323. doi:10.1093/jmicro/dfac033

Nagano, M., Hu, B., Yokobayashi, S., Yamamura, A., Umemura, F., Coradin, M., Ohta, H., Yabuta, Y., Ishikura, Y., Okamoto, I., Ikeda, H., Kawahira, N., Nosaka, Y., Shimizu, S., Kojima, Y., Mizuta, K., Kasahara, T., Imoto, Y., Meehan, K., Stocsits, R., Wutz, G., Hiraoka, Y., Murakawa, Y., Yamamoto, T., Tachibana, K., Peters, J. M., Mirny, L. A., Garcia, B. A., Majewski, J., & Saitou, M. (2022). Nucleome programming is required for the foundation of totipotency in mammalian germline development. Embo Journal, 41(13). doi:10.15252/embj.2022110600

Sato, Y., Oguchi, A., Fukushima, Y., Masuda, K., Toriu, N., Taniguchi, K., Yoshikawa, T., Cui, X. T., Kondo, M., Hosoi, T., Komidori, S., Shimizu, Y., Fujita, H., Jiang, L., Kong, Y. Y., Yamanashi, T., Seita, J., Yamamoto, T., Toyokuni, S., Hamazaki, Y., Hattori, M., Yoshikai, Y., Boor, P., Floege, J., Kawamoto, H., Murakawa, Y., Minato, N., & Yanagita, M. (2022). CD153/CD30 signaling promotes age-dependent tertiary lymphoid tissue expansion and kidney injury. Journal of Clinical Investigation, 132(2). doi:10.1172/jci146071

Shiraki, N., Maruyama, K., Hayashi, R., Oguchi, A., Murakawa, Y., Katayama, T., Takigawa, T., Sakimoto, S., Quantock, A. J., Tsujikawa, M., & Nishida, K. (2022). PAX6-positive microglia evolve locally in hiPSC-derived ocular organoids. Stem Cell Reports, 17(2), 221-230. doi:10.1016/j.stemcr.2021.12.009

Vuoristo, S., Bhagat, S., Hyden-Granskog, C., Yoshihara, M., Gawriyski, L., Jouhilahti, E. M., Ranga, V., Tamirat, M., Huhtala, M., Kirjanov, I., Nykanen, S., Krjutskov, K., Damdimopoulos, A., Weltner, J., Hashimoto, K., Recher, G., Ezer, S., Paluoja, P., Paloviita, P., Takegami, Y., Kanemaru, A., Lundin, K., Airenne, T. T., Otonkoski, T., Tapanainen, J. S., Kawaji, H., Murakawa, Y., Burglin, T. R., Varjosalo, M., Johnson, M. S., Tuuri, T., Katayama, S., & Kere, J. (2022). DUX4 is a multifunctional factor priming human embryonic genome activation. Iscience, 25(4). doi:10.1016/j.isci.2022.104137

2021

原著論文

Hirabayashi, S., Shirakawa, K., Horisawa, Y., Matsumoto,T., Matsui, H., Yamazaki, H., Sarca, A. D., Kazuma, Y., Nomura, R., Konishi,Y., Takeuchi, S., Stanford, E., Kawaji, H., Murakawa, Y., &Takaori-Kondo, A. (2021). APOBEC3B is preferentially expressed at the G2/Mphase of cell cycle. Biochemical and Biophysical Research Communications,546, 178-184. https://doi.org/10.1016/j.bbrc.2021.02.008

Matsui, H., Shirakawa, K., Konishi, Y., Hirabayashi, S.,Sarca, A.D., Fukuda, H., Nomura, R., Stanford, E., Horisawa, Y., Kazuma, Y.,Matsumoto, T., Yamazaki, H., Murakawa, Y., Battivelli, E., Verdin, E.,Koyanagi, Y., & Takaori-Kondo, A. (2021). CAGE-Seq Reveals that HIV-1Latent Infection Does Not Trigger Unique Cellular Responses in a Jurkat T CellModel. Journal of Virology, 95(8).

Takahashi, T., Kawaji, H., Murakawa, Y.,Hayashizaki, Y., Murakami, T., Yabushita, Y., Homma, Y., Kumamoto, T.,Matsuyama, R., & Endo, I. (2021). Significance of HMGA2 expression asindependent poor prognostic marker in perihilar and distal cholangiocarcinomaresected with curative intent. Eur J Surg Oncol, 47(2), 394-400. https://doi.org/10.1016/j.ejso.2020.08.005

Higashi, H., Kato, Y., Fujita, T., Iwasaki, S.,Nakamura, M., Nishimura, Y., Takenaka, M., & Shikanai, T. (2021). The pentatricopeptide repeat protein PGR3 is required for the translation of petLand ndhG by binding their 5’UTRs. Plant Cell Physiol. https://doi.org/10.1093/pcp/pcaa180

2020

原著論文

Ooki, A., Onodera, S., Saito, A., Oguchi, A., Murakawa,Y., Sakamoto, T., Sueishi, K., Nishii, Y., & Azuma, T. (2020). CAGE-seqanalysis of osteoblast derived from cleidocranial dysplasia human inducedpluripotent stem cells. Bone, 141. https://doi.org/10.1016/j.bone.2020.115582

Tsujimoto, H., Kasahara, T., Sueta, S. I., Araoka,T., Sakamoto, S., Okada, C., Mae, S. I., Nakajima, T., Okamoto, N., Taura, D.,Nasu, M., Shimizu, T., Ryosaka, M., Li, Z., Sone, M., Ikeya, M., Watanabe, A.,& Osafune, K. (2020). A Modular Differentiation System Maps Multiple HumanKidney Lineages from Pluripotent Stem Cells. Cell Rep, 31(1), 107476. https://doi.org/10.1016/j.celrep.2020.03.040