論文・出版物
2022
原著論文
Koido, M., Hon, C. C., Koyama, S., Kawaji, H., Murakawa, Y., Ishigaki, K., Ito, K., Sese, J., Parrish, N. F., Kamatani, Y., Carninci, P., & Terao, C. Prediction of the cell-type-specific transcription of non-coding RNAs from genome sequences via machine learning. Nature Biomedical Engineering. doi:10.1038/s41551-022-00961-8
Kunishima, N., Takeda, Y., Hirose, R., Kume, S., Maeda, M., Oguchi, A., Yanagita, M., Shibuya, H., Tamura, M., Kataoka, Y., Murakawa, Y., Ito, K., & Omote, K. (2022). Compact laboratory-based X-ray microscope enabling nondestructive 3D structure acquisition of mouse nephron with high speed and better user accessibility. Microscopy, 71(6), 315-323. doi:10.1093/jmicro/dfac033
Nagano, M., Hu, B., Yokobayashi, S., Yamamura, A., Umemura, F., Coradin, M., Ohta, H., Yabuta, Y., Ishikura, Y., Okamoto, I., Ikeda, H., Kawahira, N., Nosaka, Y., Shimizu, S., Kojima, Y., Mizuta, K., Kasahara, T., Imoto, Y., Meehan, K., Stocsits, R., Wutz, G., Hiraoka, Y., Murakawa, Y., Yamamoto, T., Tachibana, K., Peters, J. M., Mirny, L. A., Garcia, B. A., Majewski, J., & Saitou, M. (2022). Nucleome programming is required for the foundation of totipotency in mammalian germline development. Embo Journal, 41(13). doi:10.15252/embj.2022110600
Sato, Y., Oguchi, A., Fukushima, Y., Masuda, K., Toriu, N., Taniguchi, K., Yoshikawa, T., Cui, X. T., Kondo, M., Hosoi, T., Komidori, S., Shimizu, Y., Fujita, H., Jiang, L., Kong, Y. Y., Yamanashi, T., Seita, J., Yamamoto, T., Toyokuni, S., Hamazaki, Y., Hattori, M., Yoshikai, Y., Boor, P., Floege, J., Kawamoto, H., Murakawa, Y., Minato, N., & Yanagita, M. (2022). CD153/CD30 signaling promotes age-dependent tertiary lymphoid tissue expansion and kidney injury. Journal of Clinical Investigation, 132(2). doi:10.1172/jci146071
Shiraki, N., Maruyama, K., Hayashi, R., Oguchi, A., Murakawa, Y., Katayama, T., Takigawa, T., Sakimoto, S., Quantock, A. J., Tsujikawa, M., & Nishida, K. (2022). PAX6-positive microglia evolve locally in hiPSC-derived ocular organoids. Stem Cell Reports, 17(2), 221-230. doi:10.1016/j.stemcr.2021.12.009
Vuoristo, S., Bhagat, S., Hyden-Granskog, C., Yoshihara, M., Gawriyski, L., Jouhilahti, E. M., Ranga, V., Tamirat, M., Huhtala, M., Kirjanov, I., Nykanen, S., Krjutskov, K., Damdimopoulos, A., Weltner, J., Hashimoto, K., Recher, G., Ezer, S., Paluoja, P., Paloviita, P., Takegami, Y., Kanemaru, A., Lundin, K., Airenne, T. T., Otonkoski, T., Tapanainen, J. S., Kawaji, H., Murakawa, Y., Burglin, T. R., Varjosalo, M., Johnson, M. S., Tuuri, T., Katayama, S., & Kere, J. (2022). DUX4 is a multifunctional factor priming human embryonic genome activation. Iscience, 25(4). doi:10.1016/j.isci.2022.104137
2021
原著論文
Hirabayashi, S., Shirakawa, K., Horisawa, Y., Matsumoto,T., Matsui, H., Yamazaki, H., Sarca, A. D., Kazuma, Y., Nomura, R., Konishi,Y., Takeuchi, S., Stanford, E., Kawaji, H., Murakawa, Y., &Takaori-Kondo, A. (2021). APOBEC3B is preferentially expressed at the G2/Mphase of cell cycle. Biochemical and Biophysical Research Communications,546, 178-184. https://doi.org/10.1016/j.bbrc.2021.02.008
Matsui, H., Shirakawa, K., Konishi, Y., Hirabayashi, S.,Sarca, A.D., Fukuda, H., Nomura, R., Stanford, E., Horisawa, Y., Kazuma, Y.,Matsumoto, T., Yamazaki, H., Murakawa, Y., Battivelli, E., Verdin, E.,Koyanagi, Y., & Takaori-Kondo, A. (2021). CAGE-Seq Reveals that HIV-1Latent Infection Does Not Trigger Unique Cellular Responses in a Jurkat T CellModel. Journal of Virology, 95(8).
Takahashi, T., Kawaji, H., Murakawa, Y.,Hayashizaki, Y., Murakami, T., Yabushita, Y., Homma, Y., Kumamoto, T.,Matsuyama, R., & Endo, I. (2021). Significance of HMGA2 expression asindependent poor prognostic marker in perihilar and distal cholangiocarcinomaresected with curative intent. Eur J Surg Oncol, 47(2), 394-400. https://doi.org/10.1016/j.ejso.2020.08.005
Higashi, H., Kato, Y., Fujita, T., Iwasaki, S.,Nakamura, M., Nishimura, Y., Takenaka, M., & Shikanai, T. (2021). The pentatricopeptide repeat protein PGR3 is required for the translation of petLand ndhG by binding their 5’UTRs. Plant Cell Physiol. https://doi.org/10.1093/pcp/pcaa180
2020
原著論文
Ooki, A., Onodera, S., Saito, A., Oguchi, A., Murakawa,Y., Sakamoto, T., Sueishi, K., Nishii, Y., & Azuma, T. (2020). CAGE-seqanalysis of osteoblast derived from cleidocranial dysplasia human inducedpluripotent stem cells. Bone, 141. https://doi.org/10.1016/j.bone.2020.115582
Tsujimoto, H., Kasahara, T., Sueta, S. I., Araoka,T., Sakamoto, S., Okada, C., Mae, S. I., Nakajima, T., Okamoto, N., Taura, D.,Nasu, M., Shimizu, T., Ryosaka, M., Li, Z., Sone, M., Ikeya, M., Watanabe, A.,& Osafune, K. (2020). A Modular Differentiation System Maps Multiple HumanKidney Lineages from Pluripotent Stem Cells. Cell Rep, 31(1), 107476. https://doi.org/10.1016/j.celrep.2020.03.040