CellMap

The CellMap is a RNA landscape inference method based on the graph Hodge decomposition.

Github Project

Installation

To install CellMap package, use pip as follows:

$ pip install cellmap

Requirements

• Python3
• matplotlib
• numpy
• scipy
• scikit-learn

Tutorial

Tutorials are prepared by jupyter notebook.

• Tutorial for pancreas endocrine cell data

Visualization

We prepare original visualization system CellMap viewer.

© 2022 ASHBi, Kyoto University