scEGOT

single cell trajectory inference framework based on Entropic Gaussian mixture Optimal Transport

Github Project

T. Yachimura et al. scEGOT: Single-cell trajectory inference framework based on entropic Gaussian mixture optimal transport. bioRxiv

Installation

To install scEGOT package, use pip as follows:

$ pip install scegot

Documentation

The tutorial is available here.

Requirements

• Python3
• GraphViz

Click here to learn how to install GraphViz (official documentation).

Paper

Yachimura, T. et al. scEGOT: single-cell trajectory inference framework based on entropic Gaussian mixture optimal transport. BMC Bioinformatics 25, 388 (2024).

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