Publications

Bourque Group

Bourgey, M., Dali, R., Eveleigh, R., Chen, K. C., Letourneau, L., Fillon, J., Michaud, M., Caron, M., Sandoval, J., Lefebvre, F., Leveque, G., Mercier, E., Bujold, D., Marquis, P., Van, P. T., Anderson de Lima Morais, D., Tremblay, J., Shao, X., Henrion, E., Gonzalez, E., Quirion, P. O., Caron, B., & Bourque, G. (2019). GenPipes: an open-source framework for distributed and scalable genomic analyses. Gigascience, 8(6). https://doi.org/10.1093/gigascience/giz037

Breeze, C. E., Reynolds, A. P., van Dongen, J., Dunham, I., Lazar, J., Neph, S., Vierstra, J., Bourque, G., Teschendorff, A. E., Stamatoyannopoulos, J. A., & Beck, S. (2019). eFORGE v2.0: updated analysis of cell type-specific signal in epigenomic data. Bioinformatics. https://doi.org/10.1093/bioinformatics/btz456

Chan, D., Shao, X., Dumargne, M. C., Aarabi, M., Simon, M. M., Kwan, T., Bailey, J. L., Robaire, B., Kimmins, S., San Gabriel, M. C., Zini, A., Librach, C., Moskovtsev, S., Grundberg, E., Bourque, G., Pastinen, T., & Trasler, J. M. (2019). Customized MethylC-Capture Sequencing to Evaluate Variation in the Human Sperm DNA Methylome Representative of Altered Folate Metabolism. Environ Health Perspect, 127(8), 87002. https://doi.org/10.1289/EHP4812

Laperle, J., Hébert-Deschamps, S., Raby, J., de Lima Morais, D. A., Barrette, M., Bujold, D., Bastin, C., Robert, M. A., Nadeau, J. F., Harel, M., Nordell-Markovits, A., Veilleux, A., Bourque, G., & Jacques, P. (2019). The epiGenomic Efficient Correlator (epiGeEC) tool allows fast comparison of user datasets with thousands of public epigenomic datasets. Bioinformatics, 35(4), 674-676. https://doi.org/10.1093/bioinformatics/bty655

Page, D. J., Miossec, M. J., Williams, S. G., Monaghan, R. M., Fotiou, E., Cordell, H. J., Sutcliffe, L., Topf, A., Bourgey, M., Bourque, G., Eveleigh, R., Dunwoodie, S. L., Winlaw, D. S., Bhattacharya, S., Breckpot, J., Devriendt, K., Gewillig, M., Brook, J. D., Setchfield, K. J., Bu’Lock, F. A., O’Sullivan, J., Stuart, G., Bezzina, C. R., Mulder, B. J. M., Postma, A. V., Bentham, J. R., Baron, M., Bhaskar, S. S., Black, G. C., Newman, W. G., Hentges, K. E., Lathrop, G. M., Santibanez-Koref, M., & Keavney, B. D. (2019). Whole Exome Sequencing Reveals the Major Genetic Contributors to Nonsyndromic Tetralogy of Fallot. Circ Res, 124(4), 553-563. https://doi.org/10.1161/CIRCRESAHA.118.313250

Shokoohi, F., Stephens, D. A., Bourque, G., Pastinen, T., Greenwood, C. M. T., & Labbe, A. (2019). A hidden markov model for identifying differentially methylated sites in bisulfite sequencing data. Biometrics, 75(1), 210-221. https://doi.org/10.1111/biom.12965